Publications
- Johri, S.†, Jeong, J.†, Tran, B. A., Schlessinger, D. I., Wongvibulsin, S., Cai, Z. R., … & Rajpurkar, P. (2023). Guidelines For Rigorous Evaluation of Clinical LLMs For Conversational Reasoning. medRxiv. [paper] [code]
- Johri S., Bi K., Fu J., Titchen B., Conway J., Crowdis J., Vokes N., Fan Z., Fong L., Park J., Liu D., He MX., Van Allen E. (2021). Dissecting tumor cell programs through group biology estimation in clinical single cell transcriptomics. biorvix. [paper] [code]
- Hoffman, S. E., Dowrey, T. W., Villacorta Martin, C., Bi, K., Titchen, B., Johri, S., … & Murphy, G. J. (2023). Intertumoral lineage diversity and immunosuppressive transcriptional programs in well-differentiated gastroenteropancreatic neuroendocrine tumors. Science Advances, 9(39), eadd9668. [paper]
- Rawat M., Srivastava A., Johri S., Gupta I., & Karmodiya K. (2021). Single-Cell RNA Sequencing Reveals Cellular Heterogeneity and Stage Transition under Temperature Stress in Synchronized Plasmodium falciparum Cells. Microbiology Spectrum. [paper] [code]
- Johri S., Jain D., & Gupta I. (2020). Integrated analysis of bulk multi omics and single-cell sequencing data confirms the molecular origin of hemodynamic changes in Covid-19 infection explaining coagulopathy and higher geriatric mortality. medRxiv. [paper] [code]
- Kundal S., Lohiya R., Bansal H.†, Johri S.†, Sarwal V.†, & Shah K. (2019). Computational prediction of replication sites in DNA sequences using complex number representation. arXiv preprint arXiv:1909.13751. [paper] [code]
† denotes equal contribution.
Talks
- March, 2024 - AAAI 2024 Spring Symposium on Clinical Foundation Models. CRAFT-MD: A Conversational Evaluation Framework for Comprehensive Assessment of Clinical LLMs. Best Paper Award! Abstract
- December, 2023 - Science in The News, Boston. From Chatbots to Carebots: Large Language Models in Modern Medicine. Talk
- April, 2023 - Mini-symposium on Cutting-edge Computational Approaches for Precision Oncology and Cancer Biology, American Association for Cancer Research Annual Meeting 2023. Dissecting tumor cell programs through group biology estimation in clinical single cell transcriptomics. Abstract
Scientific Posters
- September, 2023 - Science Day 2023, Department of Biomedical Informatics (DBMI), Harvard Medical School. CRAFT-MD: Conversational Reasoning Assessment Framework for Testing in Medicine.
- September, 2021 - JCA-AACR Precision Cancer Medicine International Conference 2021. Dissecting tumor cell programs through group biology estimation in clinical single cell transcriptomics.